anti- braf v600e mouse monoclonal antibody clone ve1 (Spring Bioscience)
90
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Spring Bioscience
anti- braf v600e mouse monoclonal antibody clone ve1
Anti Braf V600e Mouse Monoclonal Antibody Clone Ve1, supplied by Spring Bioscience, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/anti-+braf+v600e+(ve1)+antibody+clone+ve1/braf+v600e+antibody/pm37364599-22-5-13
Average 90 stars, based on 1 article reviews
Anti Braf V600e Mouse Monoclonal Antibody Clone Ve1, supplied by Spring Bioscience, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/anti-+braf+v600e+(ve1)+antibody+clone+ve1/braf+v600e+antibody/pm37364599-22-5-13
Average 90 stars, based on 1 article reviews
anti- braf v600e mouse monoclonal antibody clone ve1 - by Bioz Stars,
2026-09
90/100 stars
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Western Blot:Article Title: Integrated genotype–phenotype analysis of long‐term epilepsy‐associated ganglioglioma Article Snippet: The following primary antibodies were used: Article Title: Immunohistochemistry Helps to Distinguish Noninvasive Follicular Thyroid Neoplasm with Papillary-like Nuclear Features/Noninvasive Encapsulated Follicular Variant of Papillary Thyroid Carcinoma with Other Follicular Thyroid Lesions Article Snippet: The following primary monoclonal antibodies were used: CD56 antibody (clone RCD56; Zytomed, Berlin, Germany), CK19 antibody (clone B170; Leica, Newcastle, UK), HBME-1 antibody (clone HBME-1; Genemed, South San Francisco, CA, USA), galectin-3 antibody (clone 9C4; Leica, Bannockburn, IL, USA), CITED1 (clone CITED-1; Abcam, Cambridge, UK), TROP-2 antibody (clone F-5; Santa Cruz Biotechnology, Dallas, TX, USA), and Article Title: A TCF4-dependent gene regulatory network confers resistance to immunotherapy in melanoma. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER SensiFAST probe No-ROX kit Bioline Cat# BIO-86005 CellTiter Glo Assay Promega Cat# G7571 Deposited data Human raw single cell RNA sequencing data This study EGA: EGAD00001009291 Human raw sequencing data from Visium 10x Genomics This study EGA: EGAD00001010921 Human processed data from malignant cells This study KU Leuven RDR: https://doi.org/10.48804/GSAXBN Human processed data from breast cancer cohort Bassez et al.30 EGA: EGAD00001006608 Processed data from melanoma brain metastases Biermann et al.37 GEO: GSE185386 Processed data from melanoma metastases before and after immunotherapy Jerby-Arnon et al.18 GEO: GSE115978 TCGA melanoma data The Cancer Genome Atlas http://firebrowse.org/?cohort= SKCM&download_dialog=true CCLE cohort Barretina et al.74 https://sites.broadinstitute.org/ccle/ Experimental models: Cell lines MM011 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM047 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM057 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM099 Dr. Ghanem Ghanem, Institute Jules Bordet N/A A375 ATCC Cat# CRL-1619 HEK293 FT ThermoFisher Scientific Cat# R70007 Ma-Mel-86c Dr. Annette Paschen, University Hospital Essen N/A B16F10 murine ATCC Cat# CRL-6475 NRAS/Ink4a-/- murine Generated in house; Karras et al.25 N/A YUMM1.7-OVA Dr. Ping-Chih Ho (University of Lausanne) N/A PBMC Precision Medicine N/A Experimental odels: Organisms/strains C57BL/6 mouse KU Leuven animal facility N/A Foxn1nu mouse Taconic Biosciences N/A OT-1 mouse: C57BL/6-Tg (TcraTcrb)1100Mjb/J Jackson Labs strain #003831 Oligonucleotides Primer list See Table S6 for the list of primers N/A Recombinant DNA FUGW vector Addgene Plasmid Cat# 14883 pLVX-CMV-ZsGreen plasmid Clontech Cat# 632187 (Continued on next page) ll OPEN ACCESS Cell 187, 166–183.e1–e15, January 4, 2024 e4 Article Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults. Article Snippet: Immunohistochemistry was performed using an Article Title: The clinicopathological features of ganglioglioma with CD34 expression and BRAF mutation in patients with epilepsy Article Snippet: Immunohistochemical staining was performed with the following primary antibodies: Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults Article Snippet: Immunohistochemistry was performed using an Article Title: Molecular Profiling of Syringocystadenocarcinoma Papilliferum Reveals <i>RAS</i>-Activating Mutations Article Snippet: A Article Title: Integrated genotype-phenotype analysis of long-term epilepsy-associated ganglioglioma. Article Snippet: The following primary antibodies were used: Recombinase Polymerase Amplification:Article Title: Integrated genotype–phenotype analysis of long‐term epilepsy‐associated ganglioglioma Article Snippet: The following primary antibodies were used: Article Title: Immunohistochemistry Helps to Distinguish Noninvasive Follicular Thyroid Neoplasm with Papillary-like Nuclear Features/Noninvasive Encapsulated Follicular Variant of Papillary Thyroid Carcinoma with Other Follicular Thyroid Lesions Article Snippet: The following primary monoclonal antibodies were used: CD56 antibody (clone RCD56; Zytomed, Berlin, Germany), CK19 antibody (clone B170; Leica, Newcastle, UK), HBME-1 antibody (clone HBME-1; Genemed, South San Francisco, CA, USA), galectin-3 antibody (clone 9C4; Leica, Bannockburn, IL, USA), CITED1 (clone CITED-1; Abcam, Cambridge, UK), TROP-2 antibody (clone F-5; Santa Cruz Biotechnology, Dallas, TX, USA), and Article Title: A TCF4-dependent gene regulatory network confers resistance to immunotherapy in melanoma. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER SensiFAST probe No-ROX kit Bioline Cat# BIO-86005 CellTiter Glo Assay Promega Cat# G7571 Deposited data Human raw single cell RNA sequencing data This study EGA: EGAD00001009291 Human raw sequencing data from Visium 10x Genomics This study EGA: EGAD00001010921 Human processed data from malignant cells This study KU Leuven RDR: https://doi.org/10.48804/GSAXBN Human processed data from breast cancer cohort Bassez et al.30 EGA: EGAD00001006608 Processed data from melanoma brain metastases Biermann et al.37 GEO: GSE185386 Processed data from melanoma metastases before and after immunotherapy Jerby-Arnon et al.18 GEO: GSE115978 TCGA melanoma data The Cancer Genome Atlas http://firebrowse.org/?cohort= SKCM&download_dialog=true CCLE cohort Barretina et al.74 https://sites.broadinstitute.org/ccle/ Experimental models: Cell lines MM011 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM047 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM057 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM099 Dr. Ghanem Ghanem, Institute Jules Bordet N/A A375 ATCC Cat# CRL-1619 HEK293 FT ThermoFisher Scientific Cat# R70007 Ma-Mel-86c Dr. Annette Paschen, University Hospital Essen N/A B16F10 murine ATCC Cat# CRL-6475 NRAS/Ink4a-/- murine Generated in house; Karras et al.25 N/A YUMM1.7-OVA Dr. Ping-Chih Ho (University of Lausanne) N/A PBMC Precision Medicine N/A Experimental odels: Organisms/strains C57BL/6 mouse KU Leuven animal facility N/A Foxn1nu mouse Taconic Biosciences N/A OT-1 mouse: C57BL/6-Tg (TcraTcrb)1100Mjb/J Jackson Labs strain #003831 Oligonucleotides Primer list See Table S6 for the list of primers N/A Recombinant DNA FUGW vector Addgene Plasmid Cat# 14883 pLVX-CMV-ZsGreen plasmid Clontech Cat# 632187 (Continued on next page) ll OPEN ACCESS Cell 187, 166–183.e1–e15, January 4, 2024 e4 Article Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults. Article Snippet: Immunohistochemistry was performed using an Article Title: The clinicopathological features of ganglioglioma with CD34 expression and BRAF mutation in patients with epilepsy Article Snippet: Immunohistochemical staining was performed with the following primary antibodies: Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults Article Snippet: Immunohistochemistry was performed using an Article Title: Molecular Profiling of Syringocystadenocarcinoma Papilliferum Reveals <i>RAS</i>-Activating Mutations Article Snippet: A Article Title: Integrated genotype-phenotype analysis of long-term epilepsy-associated ganglioglioma. Article Snippet: The following primary antibodies were used: Immunohistochemistry:Article Title: Integrated genotype–phenotype analysis of long‐term epilepsy‐associated ganglioglioma Article Snippet: The following primary antibodies were used: Article Title: Immunohistochemistry Helps to Distinguish Noninvasive Follicular Thyroid Neoplasm with Papillary-like Nuclear Features/Noninvasive Encapsulated Follicular Variant of Papillary Thyroid Carcinoma with Other Follicular Thyroid Lesions Article Snippet: The following primary monoclonal antibodies were used: CD56 antibody (clone RCD56; Zytomed, Berlin, Germany), CK19 antibody (clone B170; Leica, Newcastle, UK), HBME-1 antibody (clone HBME-1; Genemed, South San Francisco, CA, USA), galectin-3 antibody (clone 9C4; Leica, Bannockburn, IL, USA), CITED1 (clone CITED-1; Abcam, Cambridge, UK), TROP-2 antibody (clone F-5; Santa Cruz Biotechnology, Dallas, TX, USA), and Article Title: A TCF4-dependent gene regulatory network confers resistance to immunotherapy in melanoma. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER SensiFAST probe No-ROX kit Bioline Cat# BIO-86005 CellTiter Glo Assay Promega Cat# G7571 Deposited data Human raw single cell RNA sequencing data This study EGA: EGAD00001009291 Human raw sequencing data from Visium 10x Genomics This study EGA: EGAD00001010921 Human processed data from malignant cells This study KU Leuven RDR: https://doi.org/10.48804/GSAXBN Human processed data from breast cancer cohort Bassez et al.30 EGA: EGAD00001006608 Processed data from melanoma brain metastases Biermann et al.37 GEO: GSE185386 Processed data from melanoma metastases before and after immunotherapy Jerby-Arnon et al.18 GEO: GSE115978 TCGA melanoma data The Cancer Genome Atlas http://firebrowse.org/?cohort= SKCM&download_dialog=true CCLE cohort Barretina et al.74 https://sites.broadinstitute.org/ccle/ Experimental models: Cell lines MM011 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM047 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM057 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM099 Dr. Ghanem Ghanem, Institute Jules Bordet N/A A375 ATCC Cat# CRL-1619 HEK293 FT ThermoFisher Scientific Cat# R70007 Ma-Mel-86c Dr. Annette Paschen, University Hospital Essen N/A B16F10 murine ATCC Cat# CRL-6475 NRAS/Ink4a-/- murine Generated in house; Karras et al.25 N/A YUMM1.7-OVA Dr. Ping-Chih Ho (University of Lausanne) N/A PBMC Precision Medicine N/A Experimental odels: Organisms/strains C57BL/6 mouse KU Leuven animal facility N/A Foxn1nu mouse Taconic Biosciences N/A OT-1 mouse: C57BL/6-Tg (TcraTcrb)1100Mjb/J Jackson Labs strain #003831 Oligonucleotides Primer list See Table S6 for the list of primers N/A Recombinant DNA FUGW vector Addgene Plasmid Cat# 14883 pLVX-CMV-ZsGreen plasmid Clontech Cat# 632187 (Continued on next page) ll OPEN ACCESS Cell 187, 166–183.e1–e15, January 4, 2024 e4 Article Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults. Article Snippet: Immunohistochemistry was performed using an Article Title: The clinicopathological features of ganglioglioma with CD34 expression and BRAF mutation in patients with epilepsy Article Snippet: Immunohistochemical staining was performed with the following primary antibodies: Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults Article Snippet: Immunohistochemistry was performed using an Article Title: Molecular Profiling of Syringocystadenocarcinoma Papilliferum Reveals <i>RAS</i>-Activating Mutations Article Snippet: A Article Title: Integrated genotype-phenotype analysis of long-term epilepsy-associated ganglioglioma. Article Snippet: The following primary antibodies were used: Clinical Proteomics:Article Title: Integrated genotype–phenotype analysis of long‐term epilepsy‐associated ganglioglioma Article Snippet: The following primary antibodies were used: Article Title: Immunohistochemistry Helps to Distinguish Noninvasive Follicular Thyroid Neoplasm with Papillary-like Nuclear Features/Noninvasive Encapsulated Follicular Variant of Papillary Thyroid Carcinoma with Other Follicular Thyroid Lesions Article Snippet: The following primary monoclonal antibodies were used: CD56 antibody (clone RCD56; Zytomed, Berlin, Germany), CK19 antibody (clone B170; Leica, Newcastle, UK), HBME-1 antibody (clone HBME-1; Genemed, South San Francisco, CA, USA), galectin-3 antibody (clone 9C4; Leica, Bannockburn, IL, USA), CITED1 (clone CITED-1; Abcam, Cambridge, UK), TROP-2 antibody (clone F-5; Santa Cruz Biotechnology, Dallas, TX, USA), and Article Title: A TCF4-dependent gene regulatory network confers resistance to immunotherapy in melanoma. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER SensiFAST probe No-ROX kit Bioline Cat# BIO-86005 CellTiter Glo Assay Promega Cat# G7571 Deposited data Human raw single cell RNA sequencing data This study EGA: EGAD00001009291 Human raw sequencing data from Visium 10x Genomics This study EGA: EGAD00001010921 Human processed data from malignant cells This study KU Leuven RDR: https://doi.org/10.48804/GSAXBN Human processed data from breast cancer cohort Bassez et al.30 EGA: EGAD00001006608 Processed data from melanoma brain metastases Biermann et al.37 GEO: GSE185386 Processed data from melanoma metastases before and after immunotherapy Jerby-Arnon et al.18 GEO: GSE115978 TCGA melanoma data The Cancer Genome Atlas http://firebrowse.org/?cohort= SKCM&download_dialog=true CCLE cohort Barretina et al.74 https://sites.broadinstitute.org/ccle/ Experimental models: Cell lines MM011 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM047 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM057 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM099 Dr. Ghanem Ghanem, Institute Jules Bordet N/A A375 ATCC Cat# CRL-1619 HEK293 FT ThermoFisher Scientific Cat# R70007 Ma-Mel-86c Dr. Annette Paschen, University Hospital Essen N/A B16F10 murine ATCC Cat# CRL-6475 NRAS/Ink4a-/- murine Generated in house; Karras et al.25 N/A YUMM1.7-OVA Dr. Ping-Chih Ho (University of Lausanne) N/A PBMC Precision Medicine N/A Experimental odels: Organisms/strains C57BL/6 mouse KU Leuven animal facility N/A Foxn1nu mouse Taconic Biosciences N/A OT-1 mouse: C57BL/6-Tg (TcraTcrb)1100Mjb/J Jackson Labs strain #003831 Oligonucleotides Primer list See Table S6 for the list of primers N/A Recombinant DNA FUGW vector Addgene Plasmid Cat# 14883 pLVX-CMV-ZsGreen plasmid Clontech Cat# 632187 (Continued on next page) ll OPEN ACCESS Cell 187, 166–183.e1–e15, January 4, 2024 e4 Article Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults. Article Snippet: Immunohistochemistry was performed using an Article Title: The clinicopathological features of ganglioglioma with CD34 expression and BRAF mutation in patients with epilepsy Article Snippet: Immunohistochemical staining was performed with the following primary antibodies: Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults Article Snippet: Immunohistochemistry was performed using an Article Title: Molecular Profiling of Syringocystadenocarcinoma Papilliferum Reveals <i>RAS</i>-Activating Mutations Article Snippet: A Article Title: Integrated genotype-phenotype analysis of long-term epilepsy-associated ganglioglioma. Article Snippet: The following primary antibodies were used: Formalin-fixed Paraffin-Embedded:Article Title: Integrated genotype–phenotype analysis of long‐term epilepsy‐associated ganglioglioma Article Snippet: The following primary antibodies were used: Article Title: Immunohistochemistry Helps to Distinguish Noninvasive Follicular Thyroid Neoplasm with Papillary-like Nuclear Features/Noninvasive Encapsulated Follicular Variant of Papillary Thyroid Carcinoma with Other Follicular Thyroid Lesions Article Snippet: The following primary monoclonal antibodies were used: CD56 antibody (clone RCD56; Zytomed, Berlin, Germany), CK19 antibody (clone B170; Leica, Newcastle, UK), HBME-1 antibody (clone HBME-1; Genemed, South San Francisco, CA, USA), galectin-3 antibody (clone 9C4; Leica, Bannockburn, IL, USA), CITED1 (clone CITED-1; Abcam, Cambridge, UK), TROP-2 antibody (clone F-5; Santa Cruz Biotechnology, Dallas, TX, USA), and Article Title: A TCF4-dependent gene regulatory network confers resistance to immunotherapy in melanoma. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER SensiFAST probe No-ROX kit Bioline Cat# BIO-86005 CellTiter Glo Assay Promega Cat# G7571 Deposited data Human raw single cell RNA sequencing data This study EGA: EGAD00001009291 Human raw sequencing data from Visium 10x Genomics This study EGA: EGAD00001010921 Human processed data from malignant cells This study KU Leuven RDR: https://doi.org/10.48804/GSAXBN Human processed data from breast cancer cohort Bassez et al.30 EGA: EGAD00001006608 Processed data from melanoma brain metastases Biermann et al.37 GEO: GSE185386 Processed data from melanoma metastases before and after immunotherapy Jerby-Arnon et al.18 GEO: GSE115978 TCGA melanoma data The Cancer Genome Atlas http://firebrowse.org/?cohort= SKCM&download_dialog=true CCLE cohort Barretina et al.74 https://sites.broadinstitute.org/ccle/ Experimental models: Cell lines MM011 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM047 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM057 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM099 Dr. Ghanem Ghanem, Institute Jules Bordet N/A A375 ATCC Cat# CRL-1619 HEK293 FT ThermoFisher Scientific Cat# R70007 Ma-Mel-86c Dr. Annette Paschen, University Hospital Essen N/A B16F10 murine ATCC Cat# CRL-6475 NRAS/Ink4a-/- murine Generated in house; Karras et al.25 N/A YUMM1.7-OVA Dr. Ping-Chih Ho (University of Lausanne) N/A PBMC Precision Medicine N/A Experimental odels: Organisms/strains C57BL/6 mouse KU Leuven animal facility N/A Foxn1nu mouse Taconic Biosciences N/A OT-1 mouse: C57BL/6-Tg (TcraTcrb)1100Mjb/J Jackson Labs strain #003831 Oligonucleotides Primer list See Table S6 for the list of primers N/A Recombinant DNA FUGW vector Addgene Plasmid Cat# 14883 pLVX-CMV-ZsGreen plasmid Clontech Cat# 632187 (Continued on next page) ll OPEN ACCESS Cell 187, 166–183.e1–e15, January 4, 2024 e4 Article Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults. Article Snippet: Immunohistochemistry was performed using an Article Title: The clinicopathological features of ganglioglioma with CD34 expression and BRAF mutation in patients with epilepsy Article Snippet: Immunohistochemical staining was performed with the following primary antibodies: Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults Article Snippet: Immunohistochemistry was performed using an Article Title: Molecular Profiling of Syringocystadenocarcinoma Papilliferum Reveals <i>RAS</i>-Activating Mutations Article Snippet: A Article Title: Integrated genotype-phenotype analysis of long-term epilepsy-associated ganglioglioma. Article Snippet: The following primary antibodies were used: Staining:Article Title: Integrated genotype–phenotype analysis of long‐term epilepsy‐associated ganglioglioma Article Snippet: The following primary antibodies were used: Article Title: Immunohistochemistry Helps to Distinguish Noninvasive Follicular Thyroid Neoplasm with Papillary-like Nuclear Features/Noninvasive Encapsulated Follicular Variant of Papillary Thyroid Carcinoma with Other Follicular Thyroid Lesions Article Snippet: The following primary monoclonal antibodies were used: CD56 antibody (clone RCD56; Zytomed, Berlin, Germany), CK19 antibody (clone B170; Leica, Newcastle, UK), HBME-1 antibody (clone HBME-1; Genemed, South San Francisco, CA, USA), galectin-3 antibody (clone 9C4; Leica, Bannockburn, IL, USA), CITED1 (clone CITED-1; Abcam, Cambridge, UK), TROP-2 antibody (clone F-5; Santa Cruz Biotechnology, Dallas, TX, USA), and Article Title: A TCF4-dependent gene regulatory network confers resistance to immunotherapy in melanoma. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER SensiFAST probe No-ROX kit Bioline Cat# BIO-86005 CellTiter Glo Assay Promega Cat# G7571 Deposited data Human raw single cell RNA sequencing data This study EGA: EGAD00001009291 Human raw sequencing data from Visium 10x Genomics This study EGA: EGAD00001010921 Human processed data from malignant cells This study KU Leuven RDR: https://doi.org/10.48804/GSAXBN Human processed data from breast cancer cohort Bassez et al.30 EGA: EGAD00001006608 Processed data from melanoma brain metastases Biermann et al.37 GEO: GSE185386 Processed data from melanoma metastases before and after immunotherapy Jerby-Arnon et al.18 GEO: GSE115978 TCGA melanoma data The Cancer Genome Atlas http://firebrowse.org/?cohort= SKCM&download_dialog=true CCLE cohort Barretina et al.74 https://sites.broadinstitute.org/ccle/ Experimental models: Cell lines MM011 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM047 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM057 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM099 Dr. Ghanem Ghanem, Institute Jules Bordet N/A A375 ATCC Cat# CRL-1619 HEK293 FT ThermoFisher Scientific Cat# R70007 Ma-Mel-86c Dr. Annette Paschen, University Hospital Essen N/A B16F10 murine ATCC Cat# CRL-6475 NRAS/Ink4a-/- murine Generated in house; Karras et al.25 N/A YUMM1.7-OVA Dr. Ping-Chih Ho (University of Lausanne) N/A PBMC Precision Medicine N/A Experimental odels: Organisms/strains C57BL/6 mouse KU Leuven animal facility N/A Foxn1nu mouse Taconic Biosciences N/A OT-1 mouse: C57BL/6-Tg (TcraTcrb)1100Mjb/J Jackson Labs strain #003831 Oligonucleotides Primer list See Table S6 for the list of primers N/A Recombinant DNA FUGW vector Addgene Plasmid Cat# 14883 pLVX-CMV-ZsGreen plasmid Clontech Cat# 632187 (Continued on next page) ll OPEN ACCESS Cell 187, 166–183.e1–e15, January 4, 2024 e4 Article Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults. Article Snippet: Immunohistochemistry was performed using an Article Title: The clinicopathological features of ganglioglioma with CD34 expression and BRAF mutation in patients with epilepsy Article Snippet: Immunohistochemical staining was performed with the following primary antibodies: Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults Article Snippet: Immunohistochemistry was performed using an Article Title: Molecular Profiling of Syringocystadenocarcinoma Papilliferum Reveals <i>RAS</i>-Activating Mutations Article Snippet: A Article Title: Integrated genotype-phenotype analysis of long-term epilepsy-associated ganglioglioma. Article Snippet: The following primary antibodies were used: Immunohistochemical staining:Article Title: Integrated genotype–phenotype analysis of long‐term epilepsy‐associated ganglioglioma Article Snippet: The following primary antibodies were used: Article Title: Immunohistochemistry Helps to Distinguish Noninvasive Follicular Thyroid Neoplasm with Papillary-like Nuclear Features/Noninvasive Encapsulated Follicular Variant of Papillary Thyroid Carcinoma with Other Follicular Thyroid Lesions Article Snippet: The following primary monoclonal antibodies were used: CD56 antibody (clone RCD56; Zytomed, Berlin, Germany), CK19 antibody (clone B170; Leica, Newcastle, UK), HBME-1 antibody (clone HBME-1; Genemed, South San Francisco, CA, USA), galectin-3 antibody (clone 9C4; Leica, Bannockburn, IL, USA), CITED1 (clone CITED-1; Abcam, Cambridge, UK), TROP-2 antibody (clone F-5; Santa Cruz Biotechnology, Dallas, TX, USA), and Article Title: A TCF4-dependent gene regulatory network confers resistance to immunotherapy in melanoma. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER SensiFAST probe No-ROX kit Bioline Cat# BIO-86005 CellTiter Glo Assay Promega Cat# G7571 Deposited data Human raw single cell RNA sequencing data This study EGA: EGAD00001009291 Human raw sequencing data from Visium 10x Genomics This study EGA: EGAD00001010921 Human processed data from malignant cells This study KU Leuven RDR: https://doi.org/10.48804/GSAXBN Human processed data from breast cancer cohort Bassez et al.30 EGA: EGAD00001006608 Processed data from melanoma brain metastases Biermann et al.37 GEO: GSE185386 Processed data from melanoma metastases before and after immunotherapy Jerby-Arnon et al.18 GEO: GSE115978 TCGA melanoma data The Cancer Genome Atlas http://firebrowse.org/?cohort= SKCM&download_dialog=true CCLE cohort Barretina et al.74 https://sites.broadinstitute.org/ccle/ Experimental models: Cell lines MM011 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM047 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM057 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM099 Dr. Ghanem Ghanem, Institute Jules Bordet N/A A375 ATCC Cat# CRL-1619 HEK293 FT ThermoFisher Scientific Cat# R70007 Ma-Mel-86c Dr. Annette Paschen, University Hospital Essen N/A B16F10 murine ATCC Cat# CRL-6475 NRAS/Ink4a-/- murine Generated in house; Karras et al.25 N/A YUMM1.7-OVA Dr. Ping-Chih Ho (University of Lausanne) N/A PBMC Precision Medicine N/A Experimental odels: Organisms/strains C57BL/6 mouse KU Leuven animal facility N/A Foxn1nu mouse Taconic Biosciences N/A OT-1 mouse: C57BL/6-Tg (TcraTcrb)1100Mjb/J Jackson Labs strain #003831 Oligonucleotides Primer list See Table S6 for the list of primers N/A Recombinant DNA FUGW vector Addgene Plasmid Cat# 14883 pLVX-CMV-ZsGreen plasmid Clontech Cat# 632187 (Continued on next page) ll OPEN ACCESS Cell 187, 166–183.e1–e15, January 4, 2024 e4 Article Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults. Article Snippet: Immunohistochemistry was performed using an Article Title: The clinicopathological features of ganglioglioma with CD34 expression and BRAF mutation in patients with epilepsy Article Snippet: Immunohistochemical staining was performed with the following primary antibodies: Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults Article Snippet: Immunohistochemistry was performed using an Article Title: Molecular Profiling of Syringocystadenocarcinoma Papilliferum Reveals <i>RAS</i>-Activating Mutations Article Snippet: A Article Title: Integrated genotype-phenotype analysis of long-term epilepsy-associated ganglioglioma. Article Snippet: The following primary antibodies were used: Membrane:Article Title: Integrated genotype–phenotype analysis of long‐term epilepsy‐associated ganglioglioma Article Snippet: The following primary antibodies were used: Article Title: Immunohistochemistry Helps to Distinguish Noninvasive Follicular Thyroid Neoplasm with Papillary-like Nuclear Features/Noninvasive Encapsulated Follicular Variant of Papillary Thyroid Carcinoma with Other Follicular Thyroid Lesions Article Snippet: The following primary monoclonal antibodies were used: CD56 antibody (clone RCD56; Zytomed, Berlin, Germany), CK19 antibody (clone B170; Leica, Newcastle, UK), HBME-1 antibody (clone HBME-1; Genemed, South San Francisco, CA, USA), galectin-3 antibody (clone 9C4; Leica, Bannockburn, IL, USA), CITED1 (clone CITED-1; Abcam, Cambridge, UK), TROP-2 antibody (clone F-5; Santa Cruz Biotechnology, Dallas, TX, USA), and Article Title: A TCF4-dependent gene regulatory network confers resistance to immunotherapy in melanoma. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER SensiFAST probe No-ROX kit Bioline Cat# BIO-86005 CellTiter Glo Assay Promega Cat# G7571 Deposited data Human raw single cell RNA sequencing data This study EGA: EGAD00001009291 Human raw sequencing data from Visium 10x Genomics This study EGA: EGAD00001010921 Human processed data from malignant cells This study KU Leuven RDR: https://doi.org/10.48804/GSAXBN Human processed data from breast cancer cohort Bassez et al.30 EGA: EGAD00001006608 Processed data from melanoma brain metastases Biermann et al.37 GEO: GSE185386 Processed data from melanoma metastases before and after immunotherapy Jerby-Arnon et al.18 GEO: GSE115978 TCGA melanoma data The Cancer Genome Atlas http://firebrowse.org/?cohort= SKCM&download_dialog=true CCLE cohort Barretina et al.74 https://sites.broadinstitute.org/ccle/ Experimental models: Cell lines MM011 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM047 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM057 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM099 Dr. Ghanem Ghanem, Institute Jules Bordet N/A A375 ATCC Cat# CRL-1619 HEK293 FT ThermoFisher Scientific Cat# R70007 Ma-Mel-86c Dr. Annette Paschen, University Hospital Essen N/A B16F10 murine ATCC Cat# CRL-6475 NRAS/Ink4a-/- murine Generated in house; Karras et al.25 N/A YUMM1.7-OVA Dr. Ping-Chih Ho (University of Lausanne) N/A PBMC Precision Medicine N/A Experimental odels: Organisms/strains C57BL/6 mouse KU Leuven animal facility N/A Foxn1nu mouse Taconic Biosciences N/A OT-1 mouse: C57BL/6-Tg (TcraTcrb)1100Mjb/J Jackson Labs strain #003831 Oligonucleotides Primer list See Table S6 for the list of primers N/A Recombinant DNA FUGW vector Addgene Plasmid Cat# 14883 pLVX-CMV-ZsGreen plasmid Clontech Cat# 632187 (Continued on next page) ll OPEN ACCESS Cell 187, 166–183.e1–e15, January 4, 2024 e4 Article Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults. Article Snippet: Immunohistochemistry was performed using an Article Title: The clinicopathological features of ganglioglioma with CD34 expression and BRAF mutation in patients with epilepsy Article Snippet: Immunohistochemical staining was performed with the following primary antibodies: Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults Article Snippet: Immunohistochemistry was performed using an Article Title: Molecular Profiling of Syringocystadenocarcinoma Papilliferum Reveals <i>RAS</i>-Activating Mutations Article Snippet: A Article Title: Integrated genotype-phenotype analysis of long-term epilepsy-associated ganglioglioma. Article Snippet: The following primary antibodies were used: Expressing:Article Title: Integrated genotype–phenotype analysis of long‐term epilepsy‐associated ganglioglioma Article Snippet: The following primary antibodies were used: Article Title: Immunohistochemistry Helps to Distinguish Noninvasive Follicular Thyroid Neoplasm with Papillary-like Nuclear Features/Noninvasive Encapsulated Follicular Variant of Papillary Thyroid Carcinoma with Other Follicular Thyroid Lesions Article Snippet: The following primary monoclonal antibodies were used: CD56 antibody (clone RCD56; Zytomed, Berlin, Germany), CK19 antibody (clone B170; Leica, Newcastle, UK), HBME-1 antibody (clone HBME-1; Genemed, South San Francisco, CA, USA), galectin-3 antibody (clone 9C4; Leica, Bannockburn, IL, USA), CITED1 (clone CITED-1; Abcam, Cambridge, UK), TROP-2 antibody (clone F-5; Santa Cruz Biotechnology, Dallas, TX, USA), and Article Title: A TCF4-dependent gene regulatory network confers resistance to immunotherapy in melanoma. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER SensiFAST probe No-ROX kit Bioline Cat# BIO-86005 CellTiter Glo Assay Promega Cat# G7571 Deposited data Human raw single cell RNA sequencing data This study EGA: EGAD00001009291 Human raw sequencing data from Visium 10x Genomics This study EGA: EGAD00001010921 Human processed data from malignant cells This study KU Leuven RDR: https://doi.org/10.48804/GSAXBN Human processed data from breast cancer cohort Bassez et al.30 EGA: EGAD00001006608 Processed data from melanoma brain metastases Biermann et al.37 GEO: GSE185386 Processed data from melanoma metastases before and after immunotherapy Jerby-Arnon et al.18 GEO: GSE115978 TCGA melanoma data The Cancer Genome Atlas http://firebrowse.org/?cohort= SKCM&download_dialog=true CCLE cohort Barretina et al.74 https://sites.broadinstitute.org/ccle/ Experimental models: Cell lines MM011 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM047 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM057 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM099 Dr. Ghanem Ghanem, Institute Jules Bordet N/A A375 ATCC Cat# CRL-1619 HEK293 FT ThermoFisher Scientific Cat# R70007 Ma-Mel-86c Dr. Annette Paschen, University Hospital Essen N/A B16F10 murine ATCC Cat# CRL-6475 NRAS/Ink4a-/- murine Generated in house; Karras et al.25 N/A YUMM1.7-OVA Dr. Ping-Chih Ho (University of Lausanne) N/A PBMC Precision Medicine N/A Experimental odels: Organisms/strains C57BL/6 mouse KU Leuven animal facility N/A Foxn1nu mouse Taconic Biosciences N/A OT-1 mouse: C57BL/6-Tg (TcraTcrb)1100Mjb/J Jackson Labs strain #003831 Oligonucleotides Primer list See Table S6 for the list of primers N/A Recombinant DNA FUGW vector Addgene Plasmid Cat# 14883 pLVX-CMV-ZsGreen plasmid Clontech Cat# 632187 (Continued on next page) ll OPEN ACCESS Cell 187, 166–183.e1–e15, January 4, 2024 e4 Article Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults. Article Snippet: Immunohistochemistry was performed using an Article Title: The clinicopathological features of ganglioglioma with CD34 expression and BRAF mutation in patients with epilepsy Article Snippet: Immunohistochemical staining was performed with the following primary antibodies: Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults Article Snippet: Immunohistochemistry was performed using an Article Title: Molecular Profiling of Syringocystadenocarcinoma Papilliferum Reveals <i>RAS</i>-Activating Mutations Article Snippet: A Article Title: Integrated genotype-phenotype analysis of long-term epilepsy-associated ganglioglioma. Article Snippet: The following primary antibodies were used: Mutagenesis:Article Title: Integrated genotype–phenotype analysis of long‐term epilepsy‐associated ganglioglioma Article Snippet: The following primary antibodies were used: Article Title: Immunohistochemistry Helps to Distinguish Noninvasive Follicular Thyroid Neoplasm with Papillary-like Nuclear Features/Noninvasive Encapsulated Follicular Variant of Papillary Thyroid Carcinoma with Other Follicular Thyroid Lesions Article Snippet: The following primary monoclonal antibodies were used: CD56 antibody (clone RCD56; Zytomed, Berlin, Germany), CK19 antibody (clone B170; Leica, Newcastle, UK), HBME-1 antibody (clone HBME-1; Genemed, South San Francisco, CA, USA), galectin-3 antibody (clone 9C4; Leica, Bannockburn, IL, USA), CITED1 (clone CITED-1; Abcam, Cambridge, UK), TROP-2 antibody (clone F-5; Santa Cruz Biotechnology, Dallas, TX, USA), and Article Title: A TCF4-dependent gene regulatory network confers resistance to immunotherapy in melanoma. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER SensiFAST probe No-ROX kit Bioline Cat# BIO-86005 CellTiter Glo Assay Promega Cat# G7571 Deposited data Human raw single cell RNA sequencing data This study EGA: EGAD00001009291 Human raw sequencing data from Visium 10x Genomics This study EGA: EGAD00001010921 Human processed data from malignant cells This study KU Leuven RDR: https://doi.org/10.48804/GSAXBN Human processed data from breast cancer cohort Bassez et al.30 EGA: EGAD00001006608 Processed data from melanoma brain metastases Biermann et al.37 GEO: GSE185386 Processed data from melanoma metastases before and after immunotherapy Jerby-Arnon et al.18 GEO: GSE115978 TCGA melanoma data The Cancer Genome Atlas http://firebrowse.org/?cohort= SKCM&download_dialog=true CCLE cohort Barretina et al.74 https://sites.broadinstitute.org/ccle/ Experimental models: Cell lines MM011 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM047 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM057 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM099 Dr. Ghanem Ghanem, Institute Jules Bordet N/A A375 ATCC Cat# CRL-1619 HEK293 FT ThermoFisher Scientific Cat# R70007 Ma-Mel-86c Dr. Annette Paschen, University Hospital Essen N/A B16F10 murine ATCC Cat# CRL-6475 NRAS/Ink4a-/- murine Generated in house; Karras et al.25 N/A YUMM1.7-OVA Dr. Ping-Chih Ho (University of Lausanne) N/A PBMC Precision Medicine N/A Experimental odels: Organisms/strains C57BL/6 mouse KU Leuven animal facility N/A Foxn1nu mouse Taconic Biosciences N/A OT-1 mouse: C57BL/6-Tg (TcraTcrb)1100Mjb/J Jackson Labs strain #003831 Oligonucleotides Primer list See Table S6 for the list of primers N/A Recombinant DNA FUGW vector Addgene Plasmid Cat# 14883 pLVX-CMV-ZsGreen plasmid Clontech Cat# 632187 (Continued on next page) ll OPEN ACCESS Cell 187, 166–183.e1–e15, January 4, 2024 e4 Article Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults. Article Snippet: Immunohistochemistry was performed using an Article Title: The clinicopathological features of ganglioglioma with CD34 expression and BRAF mutation in patients with epilepsy Article Snippet: Immunohistochemical staining was performed with the following primary antibodies: Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults Article Snippet: Immunohistochemistry was performed using an Article Title: Molecular Profiling of Syringocystadenocarcinoma Papilliferum Reveals <i>RAS</i>-Activating Mutations Article Snippet: A Article Title: Integrated genotype-phenotype analysis of long-term epilepsy-associated ganglioglioma. Article Snippet: The following primary antibodies were used: Biomarker Discovery:Article Title: Integrated genotype–phenotype analysis of long‐term epilepsy‐associated ganglioglioma Article Snippet: The following primary antibodies were used: Article Title: Immunohistochemistry Helps to Distinguish Noninvasive Follicular Thyroid Neoplasm with Papillary-like Nuclear Features/Noninvasive Encapsulated Follicular Variant of Papillary Thyroid Carcinoma with Other Follicular Thyroid Lesions Article Snippet: The following primary monoclonal antibodies were used: CD56 antibody (clone RCD56; Zytomed, Berlin, Germany), CK19 antibody (clone B170; Leica, Newcastle, UK), HBME-1 antibody (clone HBME-1; Genemed, South San Francisco, CA, USA), galectin-3 antibody (clone 9C4; Leica, Bannockburn, IL, USA), CITED1 (clone CITED-1; Abcam, Cambridge, UK), TROP-2 antibody (clone F-5; Santa Cruz Biotechnology, Dallas, TX, USA), and Article Title: A TCF4-dependent gene regulatory network confers resistance to immunotherapy in melanoma. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER SensiFAST probe No-ROX kit Bioline Cat# BIO-86005 CellTiter Glo Assay Promega Cat# G7571 Deposited data Human raw single cell RNA sequencing data This study EGA: EGAD00001009291 Human raw sequencing data from Visium 10x Genomics This study EGA: EGAD00001010921 Human processed data from malignant cells This study KU Leuven RDR: https://doi.org/10.48804/GSAXBN Human processed data from breast cancer cohort Bassez et al.30 EGA: EGAD00001006608 Processed data from melanoma brain metastases Biermann et al.37 GEO: GSE185386 Processed data from melanoma metastases before and after immunotherapy Jerby-Arnon et al.18 GEO: GSE115978 TCGA melanoma data The Cancer Genome Atlas http://firebrowse.org/?cohort= SKCM&download_dialog=true CCLE cohort Barretina et al.74 https://sites.broadinstitute.org/ccle/ Experimental models: Cell lines MM011 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM047 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM057 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM099 Dr. Ghanem Ghanem, Institute Jules Bordet N/A A375 ATCC Cat# CRL-1619 HEK293 FT ThermoFisher Scientific Cat# R70007 Ma-Mel-86c Dr. Annette Paschen, University Hospital Essen N/A B16F10 murine ATCC Cat# CRL-6475 NRAS/Ink4a-/- murine Generated in house; Karras et al.25 N/A YUMM1.7-OVA Dr. Ping-Chih Ho (University of Lausanne) N/A PBMC Precision Medicine N/A Experimental odels: Organisms/strains C57BL/6 mouse KU Leuven animal facility N/A Foxn1nu mouse Taconic Biosciences N/A OT-1 mouse: C57BL/6-Tg (TcraTcrb)1100Mjb/J Jackson Labs strain #003831 Oligonucleotides Primer list See Table S6 for the list of primers N/A Recombinant DNA FUGW vector Addgene Plasmid Cat# 14883 pLVX-CMV-ZsGreen plasmid Clontech Cat# 632187 (Continued on next page) ll OPEN ACCESS Cell 187, 166–183.e1–e15, January 4, 2024 e4 Article Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults. Article Snippet: Immunohistochemistry was performed using an Article Title: The clinicopathological features of ganglioglioma with CD34 expression and BRAF mutation in patients with epilepsy Article Snippet: Immunohistochemical staining was performed with the following primary antibodies: Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults Article Snippet: Immunohistochemistry was performed using an Article Title: Molecular Profiling of Syringocystadenocarcinoma Papilliferum Reveals <i>RAS</i>-Activating Mutations Article Snippet: A Article Title: Integrated genotype-phenotype analysis of long-term epilepsy-associated ganglioglioma. Article Snippet: The following primary antibodies were used: Bioprocessing:Article Title: Integrated genotype–phenotype analysis of long‐term epilepsy‐associated ganglioglioma Article Snippet: The following primary antibodies were used: Article Title: Immunohistochemistry Helps to Distinguish Noninvasive Follicular Thyroid Neoplasm with Papillary-like Nuclear Features/Noninvasive Encapsulated Follicular Variant of Papillary Thyroid Carcinoma with Other Follicular Thyroid Lesions Article Snippet: The following primary monoclonal antibodies were used: CD56 antibody (clone RCD56; Zytomed, Berlin, Germany), CK19 antibody (clone B170; Leica, Newcastle, UK), HBME-1 antibody (clone HBME-1; Genemed, South San Francisco, CA, USA), galectin-3 antibody (clone 9C4; Leica, Bannockburn, IL, USA), CITED1 (clone CITED-1; Abcam, Cambridge, UK), TROP-2 antibody (clone F-5; Santa Cruz Biotechnology, Dallas, TX, USA), and Article Title: A TCF4-dependent gene regulatory network confers resistance to immunotherapy in melanoma. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER SensiFAST probe No-ROX kit Bioline Cat# BIO-86005 CellTiter Glo Assay Promega Cat# G7571 Deposited data Human raw single cell RNA sequencing data This study EGA: EGAD00001009291 Human raw sequencing data from Visium 10x Genomics This study EGA: EGAD00001010921 Human processed data from malignant cells This study KU Leuven RDR: https://doi.org/10.48804/GSAXBN Human processed data from breast cancer cohort Bassez et al.30 EGA: EGAD00001006608 Processed data from melanoma brain metastases Biermann et al.37 GEO: GSE185386 Processed data from melanoma metastases before and after immunotherapy Jerby-Arnon et al.18 GEO: GSE115978 TCGA melanoma data The Cancer Genome Atlas http://firebrowse.org/?cohort= SKCM&download_dialog=true CCLE cohort Barretina et al.74 https://sites.broadinstitute.org/ccle/ Experimental models: Cell lines MM011 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM047 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM057 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM099 Dr. Ghanem Ghanem, Institute Jules Bordet N/A A375 ATCC Cat# CRL-1619 HEK293 FT ThermoFisher Scientific Cat# R70007 Ma-Mel-86c Dr. Annette Paschen, University Hospital Essen N/A B16F10 murine ATCC Cat# CRL-6475 NRAS/Ink4a-/- murine Generated in house; Karras et al.25 N/A YUMM1.7-OVA Dr. Ping-Chih Ho (University of Lausanne) N/A PBMC Precision Medicine N/A Experimental odels: Organisms/strains C57BL/6 mouse KU Leuven animal facility N/A Foxn1nu mouse Taconic Biosciences N/A OT-1 mouse: C57BL/6-Tg (TcraTcrb)1100Mjb/J Jackson Labs strain #003831 Oligonucleotides Primer list See Table S6 for the list of primers N/A Recombinant DNA FUGW vector Addgene Plasmid Cat# 14883 pLVX-CMV-ZsGreen plasmid Clontech Cat# 632187 (Continued on next page) ll OPEN ACCESS Cell 187, 166–183.e1–e15, January 4, 2024 e4 Article Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults. Article Snippet: Immunohistochemistry was performed using an Article Title: The clinicopathological features of ganglioglioma with CD34 expression and BRAF mutation in patients with epilepsy Article Snippet: Immunohistochemical staining was performed with the following primary antibodies: Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults Article Snippet: Immunohistochemistry was performed using an Article Title: Molecular Profiling of Syringocystadenocarcinoma Papilliferum Reveals <i>RAS</i>-Activating Mutations Article Snippet: A Article Title: Integrated genotype-phenotype analysis of long-term epilepsy-associated ganglioglioma. Article Snippet: The following primary antibodies were used: H&E Stain:Article Title: Integrated genotype–phenotype analysis of long‐term epilepsy‐associated ganglioglioma Article Snippet: The following primary antibodies were used: Article Title: Immunohistochemistry Helps to Distinguish Noninvasive Follicular Thyroid Neoplasm with Papillary-like Nuclear Features/Noninvasive Encapsulated Follicular Variant of Papillary Thyroid Carcinoma with Other Follicular Thyroid Lesions Article Snippet: The following primary monoclonal antibodies were used: CD56 antibody (clone RCD56; Zytomed, Berlin, Germany), CK19 antibody (clone B170; Leica, Newcastle, UK), HBME-1 antibody (clone HBME-1; Genemed, South San Francisco, CA, USA), galectin-3 antibody (clone 9C4; Leica, Bannockburn, IL, USA), CITED1 (clone CITED-1; Abcam, Cambridge, UK), TROP-2 antibody (clone F-5; Santa Cruz Biotechnology, Dallas, TX, USA), and Article Title: A TCF4-dependent gene regulatory network confers resistance to immunotherapy in melanoma. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER SensiFAST probe No-ROX kit Bioline Cat# BIO-86005 CellTiter Glo Assay Promega Cat# G7571 Deposited data Human raw single cell RNA sequencing data This study EGA: EGAD00001009291 Human raw sequencing data from Visium 10x Genomics This study EGA: EGAD00001010921 Human processed data from malignant cells This study KU Leuven RDR: https://doi.org/10.48804/GSAXBN Human processed data from breast cancer cohort Bassez et al.30 EGA: EGAD00001006608 Processed data from melanoma brain metastases Biermann et al.37 GEO: GSE185386 Processed data from melanoma metastases before and after immunotherapy Jerby-Arnon et al.18 GEO: GSE115978 TCGA melanoma data The Cancer Genome Atlas http://firebrowse.org/?cohort= SKCM&download_dialog=true CCLE cohort Barretina et al.74 https://sites.broadinstitute.org/ccle/ Experimental models: Cell lines MM011 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM047 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM057 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM099 Dr. Ghanem Ghanem, Institute Jules Bordet N/A A375 ATCC Cat# CRL-1619 HEK293 FT ThermoFisher Scientific Cat# R70007 Ma-Mel-86c Dr. Annette Paschen, University Hospital Essen N/A B16F10 murine ATCC Cat# CRL-6475 NRAS/Ink4a-/- murine Generated in house; Karras et al.25 N/A YUMM1.7-OVA Dr. Ping-Chih Ho (University of Lausanne) N/A PBMC Precision Medicine N/A Experimental odels: Organisms/strains C57BL/6 mouse KU Leuven animal facility N/A Foxn1nu mouse Taconic Biosciences N/A OT-1 mouse: C57BL/6-Tg (TcraTcrb)1100Mjb/J Jackson Labs strain #003831 Oligonucleotides Primer list See Table S6 for the list of primers N/A Recombinant DNA FUGW vector Addgene Plasmid Cat# 14883 pLVX-CMV-ZsGreen plasmid Clontech Cat# 632187 (Continued on next page) ll OPEN ACCESS Cell 187, 166–183.e1–e15, January 4, 2024 e4 Article Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults. Article Snippet: Immunohistochemistry was performed using an Article Title: The clinicopathological features of ganglioglioma with CD34 expression and BRAF mutation in patients with epilepsy Article Snippet: Immunohistochemical staining was performed with the following primary antibodies: Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults Article Snippet: Immunohistochemistry was performed using an Article Title: Molecular Profiling of Syringocystadenocarcinoma Papilliferum Reveals <i>RAS</i>-Activating Mutations Article Snippet: A Article Title: Integrated genotype-phenotype analysis of long-term epilepsy-associated ganglioglioma. Article Snippet: The following primary antibodies were used: Negative Staining:Article Title: Integrated genotype–phenotype analysis of long‐term epilepsy‐associated ganglioglioma Article Snippet: The following primary antibodies were used: Article Title: Immunohistochemistry Helps to Distinguish Noninvasive Follicular Thyroid Neoplasm with Papillary-like Nuclear Features/Noninvasive Encapsulated Follicular Variant of Papillary Thyroid Carcinoma with Other Follicular Thyroid Lesions Article Snippet: The following primary monoclonal antibodies were used: CD56 antibody (clone RCD56; Zytomed, Berlin, Germany), CK19 antibody (clone B170; Leica, Newcastle, UK), HBME-1 antibody (clone HBME-1; Genemed, South San Francisco, CA, USA), galectin-3 antibody (clone 9C4; Leica, Bannockburn, IL, USA), CITED1 (clone CITED-1; Abcam, Cambridge, UK), TROP-2 antibody (clone F-5; Santa Cruz Biotechnology, Dallas, TX, USA), and Article Title: A TCF4-dependent gene regulatory network confers resistance to immunotherapy in melanoma. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER SensiFAST probe No-ROX kit Bioline Cat# BIO-86005 CellTiter Glo Assay Promega Cat# G7571 Deposited data Human raw single cell RNA sequencing data This study EGA: EGAD00001009291 Human raw sequencing data from Visium 10x Genomics This study EGA: EGAD00001010921 Human processed data from malignant cells This study KU Leuven RDR: https://doi.org/10.48804/GSAXBN Human processed data from breast cancer cohort Bassez et al.30 EGA: EGAD00001006608 Processed data from melanoma brain metastases Biermann et al.37 GEO: GSE185386 Processed data from melanoma metastases before and after immunotherapy Jerby-Arnon et al.18 GEO: GSE115978 TCGA melanoma data The Cancer Genome Atlas http://firebrowse.org/?cohort= SKCM&download_dialog=true CCLE cohort Barretina et al.74 https://sites.broadinstitute.org/ccle/ Experimental models: Cell lines MM011 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM047 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM057 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM099 Dr. Ghanem Ghanem, Institute Jules Bordet N/A A375 ATCC Cat# CRL-1619 HEK293 FT ThermoFisher Scientific Cat# R70007 Ma-Mel-86c Dr. Annette Paschen, University Hospital Essen N/A B16F10 murine ATCC Cat# CRL-6475 NRAS/Ink4a-/- murine Generated in house; Karras et al.25 N/A YUMM1.7-OVA Dr. Ping-Chih Ho (University of Lausanne) N/A PBMC Precision Medicine N/A Experimental odels: Organisms/strains C57BL/6 mouse KU Leuven animal facility N/A Foxn1nu mouse Taconic Biosciences N/A OT-1 mouse: C57BL/6-Tg (TcraTcrb)1100Mjb/J Jackson Labs strain #003831 Oligonucleotides Primer list See Table S6 for the list of primers N/A Recombinant DNA FUGW vector Addgene Plasmid Cat# 14883 pLVX-CMV-ZsGreen plasmid Clontech Cat# 632187 (Continued on next page) ll OPEN ACCESS Cell 187, 166–183.e1–e15, January 4, 2024 e4 Article Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults. Article Snippet: Immunohistochemistry was performed using an Article Title: The clinicopathological features of ganglioglioma with CD34 expression and BRAF mutation in patients with epilepsy Article Snippet: Immunohistochemical staining was performed with the following primary antibodies: Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults Article Snippet: Immunohistochemistry was performed using an Article Title: Molecular Profiling of Syringocystadenocarcinoma Papilliferum Reveals <i>RAS</i>-Activating Mutations Article Snippet: A Article Title: Integrated genotype-phenotype analysis of long-term epilepsy-associated ganglioglioma. Article Snippet: The following primary antibodies were used: Comparison:Article Title: Integrated genotype–phenotype analysis of long‐term epilepsy‐associated ganglioglioma Article Snippet: The following primary antibodies were used: Article Title: Immunohistochemistry Helps to Distinguish Noninvasive Follicular Thyroid Neoplasm with Papillary-like Nuclear Features/Noninvasive Encapsulated Follicular Variant of Papillary Thyroid Carcinoma with Other Follicular Thyroid Lesions Article Snippet: The following primary monoclonal antibodies were used: CD56 antibody (clone RCD56; Zytomed, Berlin, Germany), CK19 antibody (clone B170; Leica, Newcastle, UK), HBME-1 antibody (clone HBME-1; Genemed, South San Francisco, CA, USA), galectin-3 antibody (clone 9C4; Leica, Bannockburn, IL, USA), CITED1 (clone CITED-1; Abcam, Cambridge, UK), TROP-2 antibody (clone F-5; Santa Cruz Biotechnology, Dallas, TX, USA), and Article Title: A TCF4-dependent gene regulatory network confers resistance to immunotherapy in melanoma. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER SensiFAST probe No-ROX kit Bioline Cat# BIO-86005 CellTiter Glo Assay Promega Cat# G7571 Deposited data Human raw single cell RNA sequencing data This study EGA: EGAD00001009291 Human raw sequencing data from Visium 10x Genomics This study EGA: EGAD00001010921 Human processed data from malignant cells This study KU Leuven RDR: https://doi.org/10.48804/GSAXBN Human processed data from breast cancer cohort Bassez et al.30 EGA: EGAD00001006608 Processed data from melanoma brain metastases Biermann et al.37 GEO: GSE185386 Processed data from melanoma metastases before and after immunotherapy Jerby-Arnon et al.18 GEO: GSE115978 TCGA melanoma data The Cancer Genome Atlas http://firebrowse.org/?cohort= SKCM&download_dialog=true CCLE cohort Barretina et al.74 https://sites.broadinstitute.org/ccle/ Experimental models: Cell lines MM011 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM047 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM057 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM099 Dr. Ghanem Ghanem, Institute Jules Bordet N/A A375 ATCC Cat# CRL-1619 HEK293 FT ThermoFisher Scientific Cat# R70007 Ma-Mel-86c Dr. Annette Paschen, University Hospital Essen N/A B16F10 murine ATCC Cat# CRL-6475 NRAS/Ink4a-/- murine Generated in house; Karras et al.25 N/A YUMM1.7-OVA Dr. Ping-Chih Ho (University of Lausanne) N/A PBMC Precision Medicine N/A Experimental odels: Organisms/strains C57BL/6 mouse KU Leuven animal facility N/A Foxn1nu mouse Taconic Biosciences N/A OT-1 mouse: C57BL/6-Tg (TcraTcrb)1100Mjb/J Jackson Labs strain #003831 Oligonucleotides Primer list See Table S6 for the list of primers N/A Recombinant DNA FUGW vector Addgene Plasmid Cat# 14883 pLVX-CMV-ZsGreen plasmid Clontech Cat# 632187 (Continued on next page) ll OPEN ACCESS Cell 187, 166–183.e1–e15, January 4, 2024 e4 Article Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults. Article Snippet: Immunohistochemistry was performed using an Article Title: The clinicopathological features of ganglioglioma with CD34 expression and BRAF mutation in patients with epilepsy Article Snippet: Immunohistochemical staining was performed with the following primary antibodies: Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults Article Snippet: Immunohistochemistry was performed using an Article Title: Molecular Profiling of Syringocystadenocarcinoma Papilliferum Reveals <i>RAS</i>-Activating Mutations Article Snippet: A Article Title: Integrated genotype-phenotype analysis of long-term epilepsy-associated ganglioglioma. Article Snippet: The following primary antibodies were used: Histopathology:Article Title: Integrated genotype–phenotype analysis of long‐term epilepsy‐associated ganglioglioma Article Snippet: The following primary antibodies were used: Article Title: Immunohistochemistry Helps to Distinguish Noninvasive Follicular Thyroid Neoplasm with Papillary-like Nuclear Features/Noninvasive Encapsulated Follicular Variant of Papillary Thyroid Carcinoma with Other Follicular Thyroid Lesions Article Snippet: The following primary monoclonal antibodies were used: CD56 antibody (clone RCD56; Zytomed, Berlin, Germany), CK19 antibody (clone B170; Leica, Newcastle, UK), HBME-1 antibody (clone HBME-1; Genemed, South San Francisco, CA, USA), galectin-3 antibody (clone 9C4; Leica, Bannockburn, IL, USA), CITED1 (clone CITED-1; Abcam, Cambridge, UK), TROP-2 antibody (clone F-5; Santa Cruz Biotechnology, Dallas, TX, USA), and Article Title: A TCF4-dependent gene regulatory network confers resistance to immunotherapy in melanoma. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER SensiFAST probe No-ROX kit Bioline Cat# BIO-86005 CellTiter Glo Assay Promega Cat# G7571 Deposited data Human raw single cell RNA sequencing data This study EGA: EGAD00001009291 Human raw sequencing data from Visium 10x Genomics This study EGA: EGAD00001010921 Human processed data from malignant cells This study KU Leuven RDR: https://doi.org/10.48804/GSAXBN Human processed data from breast cancer cohort Bassez et al.30 EGA: EGAD00001006608 Processed data from melanoma brain metastases Biermann et al.37 GEO: GSE185386 Processed data from melanoma metastases before and after immunotherapy Jerby-Arnon et al.18 GEO: GSE115978 TCGA melanoma data The Cancer Genome Atlas http://firebrowse.org/?cohort= SKCM&download_dialog=true CCLE cohort Barretina et al.74 https://sites.broadinstitute.org/ccle/ Experimental models: Cell lines MM011 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM047 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM057 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM099 Dr. Ghanem Ghanem, Institute Jules Bordet N/A A375 ATCC Cat# CRL-1619 HEK293 FT ThermoFisher Scientific Cat# R70007 Ma-Mel-86c Dr. Annette Paschen, University Hospital Essen N/A B16F10 murine ATCC Cat# CRL-6475 NRAS/Ink4a-/- murine Generated in house; Karras et al.25 N/A YUMM1.7-OVA Dr. Ping-Chih Ho (University of Lausanne) N/A PBMC Precision Medicine N/A Experimental odels: Organisms/strains C57BL/6 mouse KU Leuven animal facility N/A Foxn1nu mouse Taconic Biosciences N/A OT-1 mouse: C57BL/6-Tg (TcraTcrb)1100Mjb/J Jackson Labs strain #003831 Oligonucleotides Primer list See Table S6 for the list of primers N/A Recombinant DNA FUGW vector Addgene Plasmid Cat# 14883 pLVX-CMV-ZsGreen plasmid Clontech Cat# 632187 (Continued on next page) ll OPEN ACCESS Cell 187, 166–183.e1–e15, January 4, 2024 e4 Article Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults. Article Snippet: Immunohistochemistry was performed using an Article Title: The clinicopathological features of ganglioglioma with CD34 expression and BRAF mutation in patients with epilepsy Article Snippet: Immunohistochemical staining was performed with the following primary antibodies: Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults Article Snippet: Immunohistochemistry was performed using an Article Title: Molecular Profiling of Syringocystadenocarcinoma Papilliferum Reveals <i>RAS</i>-Activating Mutations Article Snippet: A Article Title: Integrated genotype-phenotype analysis of long-term epilepsy-associated ganglioglioma. Article Snippet: The following primary antibodies were used: Control:Article Title: Integrated genotype–phenotype analysis of long‐term epilepsy‐associated ganglioglioma Article Snippet: The following primary antibodies were used: Article Title: Immunohistochemistry Helps to Distinguish Noninvasive Follicular Thyroid Neoplasm with Papillary-like Nuclear Features/Noninvasive Encapsulated Follicular Variant of Papillary Thyroid Carcinoma with Other Follicular Thyroid Lesions Article Snippet: The following primary monoclonal antibodies were used: CD56 antibody (clone RCD56; Zytomed, Berlin, Germany), CK19 antibody (clone B170; Leica, Newcastle, UK), HBME-1 antibody (clone HBME-1; Genemed, South San Francisco, CA, USA), galectin-3 antibody (clone 9C4; Leica, Bannockburn, IL, USA), CITED1 (clone CITED-1; Abcam, Cambridge, UK), TROP-2 antibody (clone F-5; Santa Cruz Biotechnology, Dallas, TX, USA), and Article Title: A TCF4-dependent gene regulatory network confers resistance to immunotherapy in melanoma. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER SensiFAST probe No-ROX kit Bioline Cat# BIO-86005 CellTiter Glo Assay Promega Cat# G7571 Deposited data Human raw single cell RNA sequencing data This study EGA: EGAD00001009291 Human raw sequencing data from Visium 10x Genomics This study EGA: EGAD00001010921 Human processed data from malignant cells This study KU Leuven RDR: https://doi.org/10.48804/GSAXBN Human processed data from breast cancer cohort Bassez et al.30 EGA: EGAD00001006608 Processed data from melanoma brain metastases Biermann et al.37 GEO: GSE185386 Processed data from melanoma metastases before and after immunotherapy Jerby-Arnon et al.18 GEO: GSE115978 TCGA melanoma data The Cancer Genome Atlas http://firebrowse.org/?cohort= SKCM&download_dialog=true CCLE cohort Barretina et al.74 https://sites.broadinstitute.org/ccle/ Experimental models: Cell lines MM011 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM047 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM057 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM099 Dr. Ghanem Ghanem, Institute Jules Bordet N/A A375 ATCC Cat# CRL-1619 HEK293 FT ThermoFisher Scientific Cat# R70007 Ma-Mel-86c Dr. Annette Paschen, University Hospital Essen N/A B16F10 murine ATCC Cat# CRL-6475 NRAS/Ink4a-/- murine Generated in house; Karras et al.25 N/A YUMM1.7-OVA Dr. Ping-Chih Ho (University of Lausanne) N/A PBMC Precision Medicine N/A Experimental odels: Organisms/strains C57BL/6 mouse KU Leuven animal facility N/A Foxn1nu mouse Taconic Biosciences N/A OT-1 mouse: C57BL/6-Tg (TcraTcrb)1100Mjb/J Jackson Labs strain #003831 Oligonucleotides Primer list See Table S6 for the list of primers N/A Recombinant DNA FUGW vector Addgene Plasmid Cat# 14883 pLVX-CMV-ZsGreen plasmid Clontech Cat# 632187 (Continued on next page) ll OPEN ACCESS Cell 187, 166–183.e1–e15, January 4, 2024 e4 Article Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults. Article Snippet: Immunohistochemistry was performed using an Article Title: The clinicopathological features of ganglioglioma with CD34 expression and BRAF mutation in patients with epilepsy Article Snippet: Immunohistochemical staining was performed with the following primary antibodies: Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults Article Snippet: Immunohistochemistry was performed using an Article Title: Molecular Profiling of Syringocystadenocarcinoma Papilliferum Reveals <i>RAS</i>-Activating Mutations Article Snippet: A Article Title: Integrated genotype-phenotype analysis of long-term epilepsy-associated ganglioglioma. Article Snippet: The following primary antibodies were used: Magnetic Resonance Imaging:Article Title: Integrated genotype–phenotype analysis of long‐term epilepsy‐associated ganglioglioma Article Snippet: The following primary antibodies were used: Article Title: Immunohistochemistry Helps to Distinguish Noninvasive Follicular Thyroid Neoplasm with Papillary-like Nuclear Features/Noninvasive Encapsulated Follicular Variant of Papillary Thyroid Carcinoma with Other Follicular Thyroid Lesions Article Snippet: The following primary monoclonal antibodies were used: CD56 antibody (clone RCD56; Zytomed, Berlin, Germany), CK19 antibody (clone B170; Leica, Newcastle, UK), HBME-1 antibody (clone HBME-1; Genemed, South San Francisco, CA, USA), galectin-3 antibody (clone 9C4; Leica, Bannockburn, IL, USA), CITED1 (clone CITED-1; Abcam, Cambridge, UK), TROP-2 antibody (clone F-5; Santa Cruz Biotechnology, Dallas, TX, USA), and Article Title: A TCF4-dependent gene regulatory network confers resistance to immunotherapy in melanoma. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER SensiFAST probe No-ROX kit Bioline Cat# BIO-86005 CellTiter Glo Assay Promega Cat# G7571 Deposited data Human raw single cell RNA sequencing data This study EGA: EGAD00001009291 Human raw sequencing data from Visium 10x Genomics This study EGA: EGAD00001010921 Human processed data from malignant cells This study KU Leuven RDR: https://doi.org/10.48804/GSAXBN Human processed data from breast cancer cohort Bassez et al.30 EGA: EGAD00001006608 Processed data from melanoma brain metastases Biermann et al.37 GEO: GSE185386 Processed data from melanoma metastases before and after immunotherapy Jerby-Arnon et al.18 GEO: GSE115978 TCGA melanoma data The Cancer Genome Atlas http://firebrowse.org/?cohort= SKCM&download_dialog=true CCLE cohort Barretina et al.74 https://sites.broadinstitute.org/ccle/ Experimental models: Cell lines MM011 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM047 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM057 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM099 Dr. Ghanem Ghanem, Institute Jules Bordet N/A A375 ATCC Cat# CRL-1619 HEK293 FT ThermoFisher Scientific Cat# R70007 Ma-Mel-86c Dr. Annette Paschen, University Hospital Essen N/A B16F10 murine ATCC Cat# CRL-6475 NRAS/Ink4a-/- murine Generated in house; Karras et al.25 N/A YUMM1.7-OVA Dr. Ping-Chih Ho (University of Lausanne) N/A PBMC Precision Medicine N/A Experimental odels: Organisms/strains C57BL/6 mouse KU Leuven animal facility N/A Foxn1nu mouse Taconic Biosciences N/A OT-1 mouse: C57BL/6-Tg (TcraTcrb)1100Mjb/J Jackson Labs strain #003831 Oligonucleotides Primer list See Table S6 for the list of primers N/A Recombinant DNA FUGW vector Addgene Plasmid Cat# 14883 pLVX-CMV-ZsGreen plasmid Clontech Cat# 632187 (Continued on next page) ll OPEN ACCESS Cell 187, 166–183.e1–e15, January 4, 2024 e4 Article Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults. Article Snippet: Immunohistochemistry was performed using an Article Title: The clinicopathological features of ganglioglioma with CD34 expression and BRAF mutation in patients with epilepsy Article Snippet: Immunohistochemical staining was performed with the following primary antibodies: Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults Article Snippet: Immunohistochemistry was performed using an Article Title: Molecular Profiling of Syringocystadenocarcinoma Papilliferum Reveals <i>RAS</i>-Activating Mutations Article Snippet: A Article Title: Integrated genotype-phenotype analysis of long-term epilepsy-associated ganglioglioma. Article Snippet: The following primary antibodies were used: Immunostaining:Article Title: Integrated genotype–phenotype analysis of long‐term epilepsy‐associated ganglioglioma Article Snippet: The following primary antibodies were used: Article Title: Immunohistochemistry Helps to Distinguish Noninvasive Follicular Thyroid Neoplasm with Papillary-like Nuclear Features/Noninvasive Encapsulated Follicular Variant of Papillary Thyroid Carcinoma with Other Follicular Thyroid Lesions Article Snippet: The following primary monoclonal antibodies were used: CD56 antibody (clone RCD56; Zytomed, Berlin, Germany), CK19 antibody (clone B170; Leica, Newcastle, UK), HBME-1 antibody (clone HBME-1; Genemed, South San Francisco, CA, USA), galectin-3 antibody (clone 9C4; Leica, Bannockburn, IL, USA), CITED1 (clone CITED-1; Abcam, Cambridge, UK), TROP-2 antibody (clone F-5; Santa Cruz Biotechnology, Dallas, TX, USA), and Article Title: A TCF4-dependent gene regulatory network confers resistance to immunotherapy in melanoma. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER SensiFAST probe No-ROX kit Bioline Cat# BIO-86005 CellTiter Glo Assay Promega Cat# G7571 Deposited data Human raw single cell RNA sequencing data This study EGA: EGAD00001009291 Human raw sequencing data from Visium 10x Genomics This study EGA: EGAD00001010921 Human processed data from malignant cells This study KU Leuven RDR: https://doi.org/10.48804/GSAXBN Human processed data from breast cancer cohort Bassez et al.30 EGA: EGAD00001006608 Processed data from melanoma brain metastases Biermann et al.37 GEO: GSE185386 Processed data from melanoma metastases before and after immunotherapy Jerby-Arnon et al.18 GEO: GSE115978 TCGA melanoma data The Cancer Genome Atlas http://firebrowse.org/?cohort= SKCM&download_dialog=true CCLE cohort Barretina et al.74 https://sites.broadinstitute.org/ccle/ Experimental models: Cell lines MM011 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM047 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM057 Dr. Ghanem Ghanem, Institute Jules Bordet N/A MM099 Dr. Ghanem Ghanem, Institute Jules Bordet N/A A375 ATCC Cat# CRL-1619 HEK293 FT ThermoFisher Scientific Cat# R70007 Ma-Mel-86c Dr. Annette Paschen, University Hospital Essen N/A B16F10 murine ATCC Cat# CRL-6475 NRAS/Ink4a-/- murine Generated in house; Karras et al.25 N/A YUMM1.7-OVA Dr. Ping-Chih Ho (University of Lausanne) N/A PBMC Precision Medicine N/A Experimental odels: Organisms/strains C57BL/6 mouse KU Leuven animal facility N/A Foxn1nu mouse Taconic Biosciences N/A OT-1 mouse: C57BL/6-Tg (TcraTcrb)1100Mjb/J Jackson Labs strain #003831 Oligonucleotides Primer list See Table S6 for the list of primers N/A Recombinant DNA FUGW vector Addgene Plasmid Cat# 14883 pLVX-CMV-ZsGreen plasmid Clontech Cat# 632187 (Continued on next page) ll OPEN ACCESS Cell 187, 166–183.e1–e15, January 4, 2024 e4 Article Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults. Article Snippet: Immunohistochemistry was performed using an Article Title: The clinicopathological features of ganglioglioma with CD34 expression and BRAF mutation in patients with epilepsy Article Snippet: Immunohistochemical staining was performed with the following primary antibodies: Article Title: Clinical and prognostic features of Langerhans cell histiocytosis in adults Article Snippet: Immunohistochemistry was performed using an Article Title: Molecular Profiling of Syringocystadenocarcinoma Papilliferum Reveals <i>RAS</i>-Activating Mutations Article Snippet: A Article Title: Integrated genotype-phenotype analysis of long-term epilepsy-associated ganglioglioma. Article Snippet: The following primary antibodies were used: |
